Stansfeld Research Group

Bringing Membrane Proteins to Life

Research Tools

Available research tools.

MemProtMD

Database of Membrane Protein Structures

www.memprotmd.bioch.ox.ac.uk

MemProtMD Colab Notebooks

Google Colab notebooks for running the MemProtMD pipeline

github.com/pstansfeld/memprotmd

CG2AT

A tool for converting between Coarse-Grained and Atomistic

github.com/pstansfeld/cg2at

CG2AT-lite

A simplified tool for conversion between Martini Coarse-Grained and CHARMM36m

github.com/pstansfeld/cg2at-lite

CCD2MD

A tool for setting up MD simulations from co-folded complexes

github.com/pstansfeld/CCD2MD

MemPrO

A membrane protein orientation method

github.com/pstansfeld/MemPrO

MemPrOD

A tool for predicting bilayer deformations around membrane proteins

github.com/pstansfeld/MemPrOD

PyLipID

A Python package for lipid interactions analysis

github.com/pstansfeld/PyLipID

LipIDens

Simulation-assisted interpretation of lipid densities

github.com/pstansfeld/LipIDens